"""
velo - Plot velocity vectors, crosses, anisotropy bars, and wedges.
"""
import numpy as np
import pandas as pd
from pygmt.clib import Session
from pygmt.exceptions import GMTInvalidInput
from pygmt.helpers import (
build_arg_string,
deprecate_parameter,
fmt_docstring,
kwargs_to_strings,
use_alias,
)
@fmt_docstring
@deprecate_parameter("color", "fill", "v0.8.0", remove_version="v0.12.0")
@deprecate_parameter(
"uncertaintycolor", "uncertaintyfill", "v0.8.0", remove_version="v0.12.0"
)
@use_alias(
A="vector",
B="frame",
C="cmap",
D="rescale",
E="uncertaintyfill",
G="fill",
H="scale",
I="shading",
J="projection",
L="line",
N="no_clip",
R="region",
S="spec",
U="timestamp",
V="verbose",
W="pen",
Z="zvalue",
c="panel",
d="nodata",
e="find",
h="header",
i="incols",
p="perspective",
t="transparency",
)
@kwargs_to_strings(R="sequence", c="sequence_comma", i="sequence_comma", p="sequence")
def velo(self, data=None, **kwargs):
r"""
Plot velocity vectors, crosses, anisotropy bars, and wedges.
Reads data values from files, :class:`numpy.ndarray` or
:class:`pandas.DataFrame` and plots the selected geodesy symbol on a map.
You may choose from velocity vectors and their uncertainties, rotational
wedges and their uncertainties, anisotropy bars, or strain crosses. Symbol
fills or their outlines may be colored based on constant parameters or via
color lookup tables.
Must provide ``data`` and ``spec``.
Full option list at :gmt-docs:`supplements/geodesy/velo.html`
{aliases}
Parameters
----------
data : str or {table-like}
Pass in either a file name to an ASCII data table, a 2-D
{table-classes}.
Note that text columns are only supported with file or
:class:`pandas.DataFrame` inputs.
spec: str
Selects the meaning of the columns in the data file and the figure to
be plotted. In all cases, the scales are in data units per length unit
and sizes are in length units (default length unit is controlled by
:gmt-term:`PROJ_LENGTH_UNIT` unless **c**, **i**, or **p** is
appended).
- **e**\ [*velscale*/]\ *confidence*\ [**+f**\ *font*]
Velocity ellipses in (N,E) convention. The *velscale* sets the
scaling of the velocity arrows. If *velscale* is not given then we
read it from the data file as an extra column. The *confidence* sets
the 2-dimensional confidence limit for the ellipse, e.g. 0.95 for 95%
confidence ellipse. Use **+f** to set the font and size of the text
[Default is 9p,Helvetica,black]; give **+f**\ 0 to deactivate
labeling. The arrow will be drawn with the pen attributes specified
by the ``pen`` parameter and the arrow-head can be colored via
``fill``. The ellipse will be filled with the color or shade
specified by the ``uncertaintyfill`` parameter [Default is
transparent], and its outline will be drawn if ``line`` is selected
using the pen selected (by ``pen`` if not given by ``line``).
Parameters are expected to be in the following columns:
- **1**,\ **2**: longitude, latitude of station
- **3**,\ **4**: eastward, northward velocity
- **5**,\ **6**: uncertainty of eastward, northward velocities
(1-sigma)
- **7**: correlation between eastward and northward components
- **Trailing text**: name of station (optional)
- **n**\ [*barscale*]
Anisotropy bars. *barscale* sets the scaling of the bars. If
*barscale* is not given then we read it from the data file as an
extra column. Parameters are expected to be in the following columns:
- **1**,\ **2**: longitude, latitude of station
- **3**,\ **4**: eastward, northward components of anisotropy
vector
- **r**\ [*velscale*/]\ *confidence*\ [**+f**\ *font*]
Velocity ellipses in rotated convention. The *velscale* sets the
scaling of the velocity arrows. If *velscale* is not given then we
read it from the data file as an extra column. The *confidence* sets
the 2-dimensional confidence limit for the ellipse, e.g. 0.95 for 95%
confidence ellipse. Use **+f** to set the font and size of the text
[Default is 9p,Helvetica,black]; give **+f**\ 0 to deactivate
labeling. The arrow will be drawn with the pen attributes specified
by the ``pen`` parameter and the arrow-head can be colored via
``fill``. The ellipse will be filled with the color or shade
specified by the ``uncertaintyfill`` parameter [Default is
transparent], and its outline will be drawn if ``line`` is selected
using the pen selected (by ``pen`` if not given by ``line``).
Parameters are expected to be in the following columns:
- **1**,\ **2**: longitude, latitude of station
- **3**,\ **4**: eastward, northward velocity
- **5**,\ **6**: semi-major, semi-minor axes
- **7**: counter-clockwise angle, in degrees, from horizontal axis
to major axis of ellipse.
- **Trailing text**: name of station (optional)
- **w**\ [*wedgescale*/]\ *wedgemag*
Rotational wedges. The *wedgescale* sets the size of the wedges. If
*wedgescale* is not given then we read it from the data file as an
extra column. Rotation values are multiplied by *wedgemag* before
plotting. For example, setting *wedgemag* to 1.e7 works well for
rotations of the order of 100 nanoradians/yr. Use ``fill`` to set
the fill color or shade for the wedge, and ``uncertaintyfill`` to
set the color or shade for the uncertainty. Parameters are expected
to be in the following columns:
- **1**,\ **2**: longitude, latitude of station
- **3**: rotation in radians
- **4**: rotation uncertainty in radians
- **x**\ [*cross_scale*]
Strain crosses. The *cross_scale* sets the size of the cross. If
*cross_scale* is not given then we read it from the data file as an
extra column. Parameters are expected to be in the following columns:
- **1**,\ **2**: longitude, latitude of station
- **3**: eps1, the most extensional eigenvalue of strain tensor,
with extension taken positive.
- **4**: eps2, the most compressional eigenvalue of strain tensor,
with extension taken positive.
- **5**: azimuth of eps2 in degrees CW from North.
{projection}
{region}
vector : bool or str
Modify vector parameters. For vector heads, append vector head *size*
[Default is 9p]. See
:gmt-docs:`supplements/geodesy/velo.html#vector-attributes` for
specifying additional attributes.
{frame}
{cmap}
rescale : str
can be used to rescale the uncertainties of velocities (``spec="e"``
and ``spec="r"``) and rotations (``spec="w"``). Can be combined with
the ``confidence`` variable.
uncertaintyfill : str
Sets the color or shade used for filling uncertainty wedges
(``spec="w"``) or velocity error ellipses (``spec="e"`` or
``spec="r"``). If ``uncertaintyfill`` is not specified, the
uncertainty regions will be transparent. **Note**: Using ``cmap`` and
``zvalue="+e"`` will update the uncertainty fill color based on the
selected measure in ``zvalue`` [magnitude error]. More details at
:gmt-docs:`cookbook/features.html#gfill-attrib`.
fill : str
Select color or pattern for filling of symbols [Default is no fill].
**Note**: Using ``cmap`` (and optionally ``zvalue``) will update the
symbol fill color based on the selected measure in ``zvalue``
[magnitude]. More details at
:gmt-docs:`cookbook/features.html#gfill-attrib`.
scale : float or bool
[*scale*].
Scale symbol sizes and pen widths on a per-record basis using the
*scale* read from the data set, given as the first column after the
(optional) *z* and *size* columns [Default is no scaling]. The symbol
size is either provided by ``spec`` or via the input *size* column.
Alternatively, append a constant *scale* that should be used instead of
reading a scale column.
shading : float or bool
*intens*.
Use the supplied *intens* value (nominally in the -1 to +1 range) to
modulate the symbol fill color by simulating illumination [Default is
none]. If *intens* is not provided we will instead read the intensity
from an extra data column after the required input columns determined
by ``spec``.
line: str
[*pen*\ [**+c**\ [**f**\|\ **l**]]].
Draw lines. Ellipses and rotational wedges will have their outlines
drawn using the current pen (see ``pen``). Alternatively, append a
separate pen to use for the error outlines. If the modifier **+cl** is
appended then the color of the pen is updated from the CPT (see
``cmap``). If instead modifier **+cf** is appended then the color from
the cpt file is applied to error fill only [Default]. Use just **+c**
to set both pen and fill color.
no_clip: bool or str
Do NOT skip symbols that fall outside the frame boundary specified
by ``region`` [Default plots symbols inside frame only].
{timestamp}
{verbose}
pen : str
[*pen*][**+c**\ [**f**\|\ **l**]].
Set pen attributes for velocity arrows, ellipse circumference and fault
plane edges [Default is ``"0.25p,black,solid"``].
If the modifier **+cl** is appended then the color of the pen is
updated from the CPT (see ``cmap``). If instead modifier **+cf** is
appended then the color from the cpt file is applied to symbol fill
only [Default]. Use just **+c** to set both pen and fill color.
zvalue : str
[**m**\|\ **e**\|\ **n**\|\ **u**\ ][**+e**].
Select the quantity that will be used with the CPT given via ``cmap``
to set the fill color. Choose from **m**\ agnitude (vector magnitude
or rotation magnitude), **e**\ ast-west velocity, **n**\ orth-south
velocity, or **u**\ ser-supplied data column (supplied after the
required columns). To instead use the corresponding error estimates
(i.e., vector or rotation uncertainty) to lookup the color and paint
the error ellipse or wedge instead, append **+e**.
{panel}
{nodata}
{find}
{header}
{incols}
{perspective}
{transparency}
"""
kwargs = self._preprocess(**kwargs) # pylint: disable=protected-access
if kwargs.get("S") is None or (
kwargs.get("S") is not None and not isinstance(kwargs["S"], str)
):
raise GMTInvalidInput(
"The parameter `spec` is required and has to be a string."
)
if isinstance(data, np.ndarray) and not pd.api.types.is_numeric_dtype(data):
raise GMTInvalidInput(
"Text columns are not supported with numpy.ndarray type inputs. "
"They are only supported with file or pandas.DataFrame inputs."
)
with Session() as lib:
# Choose how data will be passed in to the module
file_context = lib.virtualfile_from_data(check_kind="vector", data=data)
with file_context as fname:
lib.call_module(module="velo", args=build_arg_string(kwargs, infile=fname))